| Basic Information | |
|---|---|
| Taxon OID | 3300031784 Open in IMG/M |
| Scaffold ID | Ga0315899_10013001 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8883 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F000903 | Metagenome / Metatranscriptome | 843 | Y |
| F001731 | Metagenome | 644 | Y |
| F002433 | Metagenome / Metatranscriptome | 559 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315899_1001300114 | F001731 | GAG | MTLYNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYTNLELINLDHSNVLIQINDSLTIELQDSTATFVPIFGGSVVDVGIAVAEVGSVDYAQRINIIALGALARLPKALTEGVLSDDFDGNQIYTILKEVLFLSWQEVPQALTWATYDPTTQWQDAENSGLGEIDQPGNYELENRSSDITDVYSLVSALATSGLGYIYENAQGQISYADSTHRTTYLATNGYVDLTANQALASGLSIQSRAGDVRNTITLRYGNNSALEVSAVDSASVGLYGQLAQIFTTTIKHAADAQDQADFYLALRAYPRFNLSNITFELTNPELDNADRDDLINVFMGMPVNLSDLPLNMNSGDFLGFVEGWTFSARYNQVSVSLILSPIAFSLQAMQWNDVPVVEQWQTINPTLDWINATIVA |
| Ga0315899_100130014 | F000903 | GGAGG | MINRVEEVQCMIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKRLGYEYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRHDRDIAVLVTGHSPKLHIIGWMPVAVAKKPRYKNTSQNNWTIPQTNLQPIETLARSNYAHPVI |
| Ga0315899_100130015 | F000403 | GGTGG | MSDYMEIINPQTRTAKLMYQGKIVEEYKIEQCDKCSKLMKFDKFGYQKGYGGENVIWFCGGCR |
| Ga0315899_100130019 | F002433 | N/A | MSVGEWTAVGGLVIAVLTAVYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEARLDQLMLEIAIKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |