NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10002710

Scaffold Ga0315899_10002710


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10002710 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19482
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (44.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016961Metagenome / Metatranscriptome243N
F058105Metagenome135N
F078766Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100027101F078766N/AQQAMPEVGDEVVLDDVRGVLKKLENGEAYVEIRSVNGMPAEYENKDDKEMYSKKPMDKESMMKMAADYDSEMGS
Ga0315899_1000271015F058105N/AMTPHPTILAAAKLLKEKWPTCSTWNDDQILNWIGIFNAKRQIGIVQDENGECCGVGAVRFLSSADEAEDIYADDPNGHIAWIEVVATTKPMAVQTLWMGMQAMCSDRVTKLGGIRKGVSRLYDFDRYFKLLMNNRICYGRNI
Ga0315899_1000271025F016961AGGMSTALTIISMAALMPLCVIAGIYVGHTLTIRSQQTTNEQSNRNRM
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