Scaffold Ga0315899

Basic Information
Taxon OID	3300031784 Open in IMG/M
Scaffold ID	Ga0315899_10001731 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031784 Open in IMG/M

Scaffold ID

Ga0315899_10001731 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24784
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (76.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

24784

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (76.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.8268

Long. (^o)

-83.1913

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1000173112	F012214	GAGG	MSDYSRLRTPFTNMSFTPDVPSNALGPNEYNNGLNVEADVRGMKKVNGDQAFLTAIPGNVIFVNGNFRDSATWVYIAATREGKWYMITANGITNITPGFGANPNVALTGYNDDINITSSWVGSVFFINDTLRPPMYFRPTDTEIRIYDTSPDNFVWNYGSGVNATRAAFVRNFCAPNVGNILIAGNLTQDLSSGITVNYPTTVRWSQAFAQTGVPATWEPTLTNIANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQSTAAPIFGIRLFNQGRGLLNNNCWANTDQNVYGIDSRDIWVFDGSDFNSLGNQKVRNYFFANLNRTYQERLFMVNNTQKYQIEIYYPDLNSNGWCNKMLSWRYDLNVWNAPKDVNNACNACEAPVYNTTSNTFMYATRCVTYGIGNSASSQLRQTGQGNSFNGAAIPALFERNNVVLQTEKGPVPYSCKTYIHRALPEIAGTGKISITLGGANSTAQTPVYGQTGIVDVVTDNPWVTTQQQSVRTVSIKVASNDATDTWNLTAMNWQATVVEDAF
Ga0315899_1000173119	F005087	GAGG	MSLFIQSANALVSRVAQWVGAIPSALTITATSYNSTTDVITVSSDPRPFVYAGDFISNGISNYTYVLEVSSTTITVSDPESIWSTVTYPGATILKMPTQSALEIQASIQLAELKMRVIELPGLRSNPYDPDDPATVTVGADGLAPIPADMNWPILFFQETPAPDTPPEAASFGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGPNYVFTPNPGEGTVIKAYYIRTFPFLFSPTSDAVNPLVQNNSALASFPEGYMYGTLWAYYDKNKNNEEAQKWDGRFNDAYGKIEDQNFKDKWSGGDRHLTSEFQPRDYRYSFK
Ga0315899_1000173120	F000857	AGGA	MELDKDDTPKINEEYFTKGNLEAGVDGVFRQNDRLFNEVKSGTWSQTFKTANIDYKVGAVDGVRYVQYDQRNVESVRQYCKDRREFYTKMGTTDNPLFAGTFEAMNLPKCFAHEISSKWFNNRPWELIKRDKADKIKFYAIVNQFYSDFVCHPSGKIPLPYNPLIATK
Ga0315899_1000173124	F003521	AGGA	MKSLVKGIREAFNRRTRTEHTYKEASHEQRTLVLQNGECASRLLLNADFALMFNLYRFYLLERLEDNTTDADRISNAHFVAGVRDFIGFVEKQEYLGKIALKRAETNEKKG
Ga0315899_1000173125	F004695	N/A	EIYVKMVDYLRLTQSKNTYNRFTDYHYLNIQVASSTEPIRGIDYIHPVVAPGIDYATAIATKCLMPNGKVEFEFERFTEQDSEQSRQATEMTKYMINSKNDSYRVIRDWAQDAFLHKNGIVMVSPCRSPITQYKEVEGTRDQLRSFEIMAAEKGLTTKRQQMRKIDVDLQGAAMEAMASDENDSQQEPSADDMDDALRNNIIYRAKYKMTGYSTEVKIKHVAQHYWVCNPTISTIQEQDFCGFYDPMTIHEAKEQYPYIDMEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVVMLTTAWLRRDIDNDGEEELIECCFSGSYVLYVKEVEFIPIANMCPKPIVGNFFGYSLGERLVPMQEYATAIARAEMSFAMQSSTPRIGVNPEFVDAEEIQRGVSALFILDRKFDSTKHVYEFEPMQGNLAYVQSAMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGVRDMIYLVWRTMIQYADDYNIQQLAGVVSKGMPFLDAQSMANFEFIDRKLINIDLALGFLSEENRLTRQQLIVQCQTQFAQAMMQLDPSVPELFAKVRRPYEDTLRVLNVKDVDAYLPTIEEAAKMAQARAQQGPSMDDQEKQSKMALNMASAGEKEANTAFLVKKTEDIDMDNYYEGVAARQGKLSAVQVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315899_10001731

Overview

Ecosystem & Geography

Associated Families

Sequences