NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315326_10026912

Scaffold Ga0315326_10026912


Overview

Basic Information
Taxon OID3300031775 Open in IMG/M
Scaffold IDGa0315326_10026912 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3520
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082801Metagenome113Y
F084334Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0315326_100269122F082801AGAAGMKCPKCKSKETRVSCTEDHGDFTKRYCRCLNCEARFRTTEKYLNTIENPGRKKGSFVLNPYQCKIIKKNKYMLARYEWAAIYNVSKTTVIKAESWIESEKNKENLK
Ga0315326_100269128F084334N/AMLSDVQLALLYPFVFFFTALSLYILLNPQDDEDDDPPDRGTLIPSYYPAG

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