NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10014635

Scaffold Ga0315331_10014635


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10014635 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5812
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055699Metagenome138Y
F092180Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0315331_100146351F092180N/AMKRIFTHSAIDADGWTIRKFLSLREARHFAERNGLKVVATGEKQQTQRDLYKQSLLECGFAPF
Ga0315331_100146358F055699AGGAGGMEEDLEINYVEQESTEMPEEEAQWSHEVLMQFELLIDSLGIETVMFLLDEEHENIINSWVKDKVDIQHRSKQ

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