NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10000257

Scaffold Ga0315331_10000257


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10000257 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34873
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (24.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081896Metagenome / Metatranscriptome114Y
F099115Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1000025716F081896N/AMICFIKKSIKSISDVYQDKSQEIINFLDRELLYEQSLKYYTDQQKITKLKMEYKEYAFSDEIHSLSSMPEPAIEEIIRINKRITDKTWGVILESEKVQNLNVYIAQMNKVQINSRKSNFFVVTDSHDIMLELNDVFNWMNKIFYIVPNTYDLNIEKEYRPSINFHCLKHLEKHISTPGSSYSDMLKSIGGIQVTVPNSKRVFSFNCKRLVPQG
Ga0315331_1000025729F099115AGAAGMENLIQHISGPNQTLVGFVKLPSGAIVSSTSRWLSDRWFLSETNFAKDLTCIEISPYKNTKDSNVFVGEKYLSHKVYASLSNIPPSIDFLSIIDADRALKVLQSINFSKYSIKHFCIAINPLKDKNFKQNRCQIQDFMKEKAVFVKQNRGELLYSVI
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