NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315331_10000228

Scaffold Ga0315331_10000228


Overview

Basic Information
Taxon OID3300031774 Open in IMG/M
Scaffold IDGa0315331_10000228 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36407
Total Scaffold Genes81 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (25.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024089Metagenome / Metatranscriptome207Y
F034890Metagenome / Metatranscriptome173Y
F048843Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0315331_1000022826F034890N/AMIQIEDSNNEKYHINPKQVIYVKERVHLNKLLFKILLVNGEVIMTSNEHGAKCIIASIKSKKS
Ga0315331_1000022848F024089N/AMNKLEEAMGNLNNIQSNIDAVIHAIGDSPKQYTEDELLNMLMGMSQIHQTWYDNLWMEYENHRRANNLFDKDDIFDQNYTKMKQGK
Ga0315331_1000022869F048843AGGAMNSKKKKDKYFVFSVPTAFVYEIQAETEEEAREILVEEGGLSIFGEQCEMTSEDYAQADLEQTYEM
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