NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315332_10018682

Scaffold Ga0315332_10018682


Overview

Basic Information
Taxon OID3300031773 Open in IMG/M
Scaffold IDGa0315332_10018682 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4228
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068714Metagenome124N
F070560Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0315332_100186822F068714N/AMKILEKNKSNIIYKEDTGIVSIVPNTPYFRLKVLENKNDRIKFDLPIEGIEVLETFNGMIFNISLNGQTITTRPNMADAVVESFNNTDKLYEIFDKYNNNKYNLKLLEGVLEKYGDRIKTASEGFVIDDMFLIDRTGVCWIWDSKKKCRNQSHRTNLGSGAICIVVNKTQALKLKTKQGLVQIDELGYIILSKIEFVLNPNLKDGVFMSQIPKKMKDILERNSLK
Ga0315332_100186823F070560N/AMLMTQTQLKQLCSRVQPEAQIPKTESMVQVSSLMTQADHAQFGKGLSSIFVDVPHHTSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG
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