| Basic Information | |
|---|---|
| Taxon OID | 3300031759 Open in IMG/M |
| Scaffold ID | Ga0316219_1000759 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 40159 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (67.86%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026474 | Metagenome / Metatranscriptome | 197 | Y |
| F033683 | Metagenome | 176 | Y |
| F045505 | Metagenome | 152 | Y |
| F067354 | Metagenome / Metatranscriptome | 125 | Y |
| F096502 | Metagenome / Metatranscriptome | 104 | Y |
| F102402 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316219_100075917 | F033683 | N/A | MNYENIELEAKTAAADTRWFNGTSESILIRLDRLQDILDRTRVAASNPNTTDRELERYAGVLAELGAEKEQLEKLASEYVDFDAEDYLNSLPGGTIAKEYRVSSAGTSDLGADDGSLLYRTAASIENEFEDADWINFVTAGAEVWIEDQNNRLLKSQSNTREAAVFYVEKKTLPILDSAKRASIIDNFVDNVEICRRAKNDGNEFRSIKSAGKNKLAASFVQDAIDDSFGNDLNWL |
| Ga0316219_100075919 | F102402 | GAG | MDSTSEYIGKVVALLTAILSEQENLAYEMVLESNPIELFSALAGVLLSALGKLATINDKKLEDYLKDLGMLAIRSE |
| Ga0316219_100075925 | F045505 | N/A | MKKVTIVISYDAMNAQSDELASQEISETIAGLMNSLRTQVNGVQVSVKFQNNNKEK |
| Ga0316219_100075944 | F096502 | AGGAG | MEPRLNIKVASLFDKKADASPDNNFQDPSQQWIGDFIDEDSNHFDKNMQAYEEQRQGLGDQIQRYVDESHMHATDANPASDPVLMSQNPALVNSRDLQDVPTKAASKIASQSKGFRNSQARPDFTMGVVANTNKGTIVESRVVAETPTTKIAGTVIAVGDREFAVVWDDRTASVERKSDFELVIAE |
| Ga0316219_100075949 | F067354 | AGGAG | MSTLFNNEAPRILPKSAFNKKSFLEIVSPLIKLDIIKEGEGLKCRNSHKLDLTNSIYEKIDEE |
| Ga0316219_10007596 | F026474 | N/A | MIARDILNTILTDAIANGHHKLAGNMDGLSDVVNIVLAAFSGVNLIHLGWMGWLGILPIGIVGKITTEKATKWSHKNIKAETE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |