NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10070937

Scaffold Ga0315907_10070937


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10070937 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3017
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F009143Metagenome / Metatranscriptome322Y
F014129Metagenome / Metatranscriptome265Y
F015730Metagenome / Metatranscriptome252Y
F038205Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100709371F014129AGGMTTLNKVREITLSNVQADEANSIVCVFCSDYASQYFCGNCGEYKGLMTLGEWLAYTQESWVM
Ga0315907_100709372F015730AGGAMLSNTTLEKIKYEYQHGGVQNYHYEISLSERKALLRYLFSLPTKCSAECEATHTA
Ga0315907_100709374F009143GAGGMMTKWDTIQADIKDAYVYLDEEEMYNKALEEGLIPLDDNYDDDELHNALTLDWNE
Ga0315907_100709376F000447AGGMGYIEIFRVNEDGAGWVDLSEATSEEMLDLEIGLFQEGAL
Ga0315907_100709377F038205GGAMSKIKEYIEIIAAECDECGGAGFIFFGDEKNYDVESCECATDEWGI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.