NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10024452

Scaffold Ga0315907_10024452


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10024452 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5534
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F001507Metagenome / Metatranscriptome681Y
F003393Metagenome / Metatranscriptome489Y
F009531Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002445213F003393N/AMRNKMKTVEKDDIIPIMDYVKVDVLTAGQLEVDDLILVDGEVVSIVEIISLPDGYTIEIINDFGEREVIEVEEYQQFDLMMLQ
Ga0315907_100244522F001507AGGAMSDLIHKPYTIDELVTEIYEDNFSHFDFMENMNGGQCDCNLHITLDTIMQYWGN
Ga0315907_100244523F009531N/AMTKQVEIYEMNYSCSPGGVDCWEATINTYGNSLTISDFKTAGDALNYVIDKFPDEMLELNVTNLQTYEKEMSDV
Ga0315907_100244528F000684AGGMTLGGYTYQLGDLFTTSKTGITGRIVKFSPISSKLTRVSLQLANGQRRLAMVATTK
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