NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10016967

Scaffold Ga0315907_10016967


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10016967 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6857
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006467Metagenome / Metatranscriptome372Y
F007913Metagenome / Metatranscriptome342Y
F046346Metagenome151N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001696710F046346GAGMKYRIKSQLYSDAEAQKKVGAILDDCGPSSAAAAASFVHGYSPDFSAADGVSAKERATGFKEKQGVSDNGSSLSELMKTVRELGCKAKPADTFAEAVAAAKDGAALIVWVQAPIGYPKQALSKWHRNWESYWKKKDPKVIAAGYGHMTSAGYDSETQTLVFADPTFDERTPKEQYAVPVTEAELKAIASGKPGSPASHIVIVTKKEKL
Ga0315907_1001696711F004668GGAGGMTEEEHVKELTEQGWTRVDIAPDEWVALVSNDDASSYGGTLWKRGDNGNDYSEGCTAGHPISAALDFQNAALALAAHIKEEISE
Ga0315907_1001696712F006467GGAMFKNIILDLIGGAWTILGLLFAVVVLPEGQTQSTMATLFILLTVVWIATGPLRWRE
Ga0315907_1001696714F007913N/ASIVERLDRIESDLACVRVEMAETRGAYRLAKFVIALLGISGLGGLTAWLSNSK
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