| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10013591 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7863 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000847 | Metagenome / Metatranscriptome | 861 | N |
| F001129 | Metagenome / Metatranscriptome | 768 | Y |
| F007748 | Metagenome / Metatranscriptome | 345 | N |
| F011581 | Metagenome / Metatranscriptome | 289 | N |
| F014844 | Metagenome / Metatranscriptome | 259 | Y |
| F088549 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1001359112 | F011581 | N/A | MTYHSTRPAKALTNALERLMIAVSPADLEQNHALLCEYRRACELLGYDPAKAQWSGIHEVSASQLPKDEDHTVCYYPLLNPEE |
| Ga0315907_100135913 | F000847 | N/A | MSWIRIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYGHNICEIPT |
| Ga0315907_100135914 | F001129 | N/A | MLGQGGTMEFVDAAVTGKNFDFIVVNTAATFTTLTGTGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL |
| Ga0315907_100135915 | F014844 | N/A | MFLGYGYGYPINPFQGSFLAASAWAAFNTRADADGATTAEAAVSNCLFGRFATIYNF |
| Ga0315907_100135917 | F088549 | N/A | MATFRKYEFAVYADFRTIYDAEASPNTCVELGRVNADNPKAYCVDILWEGEEPSYWVRHQVWPDPCGVHSFLGWDAQYAADYKEFATPQSK |
| Ga0315907_100135919 | F007748 | N/A | VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIESLENTIQALEAENANLKSLQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |