Scaffold Ga0315907_10011116

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315907_10011116

Scaffold Ga0315907_10011116

Overview

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10011116 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8892
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020689	Metagenome	222	Y
F026879	Metagenome	196	Y
F075657	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001111610	F020689	GAG	MNDEQENRLVVVKDHQVKNLLASLAIAAIGCLAYWAYDAQVRVDEYNSKVNSLTESIQAMTAKQLADQESNLKDLEENKLVEDRVKALEVTVAEQQTKISELEAKLSRKKK
Ga0315907_1001111613	F026879	AGGA	MYKQLAAILLLFSTSLLAADYSKNKELYMPNESGGYVVLTLEECKFPEAVKLGFDSRAYATETDSEQPVTHEGCWNSPDTAAAPNVPGVTIIPLVNLWFDGDIVFYPQNMFGPEKRRWNTVKPNI
Ga0315907_100111169	F075657	GGA	MRVTVIWIVWLALVLWWLTPELNHVKDKINERSTQIERTLNE

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