NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10005806

Scaffold Ga0315907_10005806


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10005806 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13274
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (87.80%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012016Metagenome284Y
F031359Metagenome182Y
F034908Metagenome173Y
F043777Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000580612F031359AGAAGMETPIVTTKKEKHYIVEQVVVTGYVVHGNGRKTPFSFNKDDLKPNDLLSIFEGIRRIFK
Ga0315907_1000580616F034908AGGAGGMTKFSVVVEVSMDDTYLKQVETWGVEPSDHIATILSEPLREKGLVVKTSALEVEHTMFDRLKKHQDHLAQADAYNDLEEEIISRACIGGVCED
Ga0315907_1000580626F012016AGGCGGMQETPKQPYAWATEEFNINGDLVWSSITQFRPKELSWIRDLPTKKHYITITPLYKDEANAEKITGVKSYREATKRLVDAYNGL
Ga0315907_100058069F043777N/AMKLIEGTDIIDNSPNEKAGELAEAIFDDVVFILDLEEKCIAENEDGTYNTELGQDLFNCIYEQCMNYFERETK
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