| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10004797 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15025 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (13.04%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011668 | Metagenome / Metatranscriptome | 288 | Y |
| F017989 | Metagenome | 237 | Y |
| F025268 | Metagenome / Metatranscriptome | 202 | N |
| F027487 | Metagenome / Metatranscriptome | 194 | N |
| F040160 | Metagenome | 162 | N |
| F042335 | Metagenome | 158 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_1000479714 | F042335 | N/A | MNDNTTTHGIFGTVISTTGFIVSMLPEIEASIRIGGGVISIIAGILTCIYMTKQIIKK |
| Ga0315907_1000479715 | F011668 | N/A | MNAKQIVLAMIVISFIFLGMAFLTGCAGFKNPSVCFKTDYGTFCYELPEIKGLKK |
| Ga0315907_100047973 | F040160 | N/A | MGGLGSVTTTTTMTTEKVKSLCAAITAHEDWNKLQAYLLLNVTPPEGVTTLIHAIKTIDAIGTEEQGAFKKAKSSPRNKETKDSSIDPDLDEN |
| Ga0315907_100047976 | F025268 | N/A | MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCSPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTEDGTYCGLVDDGAWFVPEHTINNEAGYDLCAIRVKIAPADLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWAKLVRVPRYVKVVLEQGCAYVPNRAYRTADFGISVAMVNKAMCKWTMPSSSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRLPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS |
| Ga0315907_100047978 | F027487 | N/A | MACFTSLPYHNKFYPLLITVSAAAGITPISFGCFDAASDASRLYQFYLAFATIGGLTPVSENCFVQKTEDQQLFVLNEAVAAALIVT |
| Ga0315907_100047979 | F017989 | N/A | MATPALSQPCFVDLTPDQQNFNIYESIKQIAGFDIPAYDQIDITYYGSTNNIATVQYLNAGDVVATLTLTYAVQPPTTNDANLTGVTVAYP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |