NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10004666

Scaffold Ga0315907_10004666


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10004666 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15260
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F007913Metagenome / Metatranscriptome342Y
F046346Metagenome151N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000466613F046346AGGAGMRIKSQLYSDAEAQRKVGAILDDCGPSSAAAAVAYVNGYNPDLQASDGVAAKARATGFVEKQGVSDNGSSLPELMKTVRELGGKARPADTFAEAVEAAKAGAALIVWVQAPIGYPKQALSKWHRNWASYWQKKDPKVIAAGYGHMTSASYDSDAQTLQFADPTFDEKHPKEQFAVPITEADLKAIASGKPGSPASHIVIVTKKENL
Ga0315907_1000466614F004668AGGMEGLMARTTDHIDDIHEQGWTRVDTAPGEWVALVPNEDNSAFGGTLWKRGEDGNDYSEGCTAGHPVSAAKGFEDAARAVAVIVKQENPS
Ga0315907_1000466617F007913GAGLERKVTRSQVDAIVERLDRIEADLACVRVEMAEARGALTLAKFVLAFIGLTGLSGLAAWLSNSK
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Institute for Fundamental Biomedical Research
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