NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307475_10054464

Scaffold Ga0307475_10054464


Overview

Basic Information
Taxon OID3300031754 Open in IMG/M
Scaffold IDGa0307475_10054464 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3015
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000989Metagenome / Metatranscriptome811Y
F006319Metagenome / Metatranscriptome376Y
F067250Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307475_100544641F000989AGGAGGVTAIDFRTDPVTARRYRVVSLVTHADIPDIVWADDQMGCYGVQGRDAKGKRIVVERSGSIRIVS
Ga0307475_100544642F006319GAGGMAYEKLDQALRQLKTDRERAEVNEAQQKKAGEEAMIRFARIKSTVVGPIFDEVVARLAAEGFFAETLDEQNDVSGPISLNVNLSEDDGFNRQGSLQVRFDPDEYKCEFGKSTMAKTASTNQMVFGDRHRQFDEMTEELVRETAEQFVLDLIGGEHFR
Ga0307475_100544643F067250AGGAGMGISMNPKMSGFRKWAEIHEPTKIDQALTGAEGGGVTAAADVRQPGKTADQQPHRPSLVPGAGKL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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