NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10005190

Scaffold Ga0307477_10005190


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10005190 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9366
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003045Metagenome / Metatranscriptome511Y
F009039Metagenome / Metatranscriptome324Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_100051901F009039GGAGGMRSALAVTIVLPLLFGIGMAEAADSTLFAETGGFLLGNAHRCGVPIERVEHVGNVIHNLIVAAAHDSSEVVAADSRFAEIFLTSAVPDQDRNALSAPCAVVVNQFDGLERHYREA
Ga0307477_100051903F003045AGGGGGMQALRGYVSAAIAALLALGFFTFYAHADGINGTDVIVQLRQTGDADALSPIRSCLADKLSQMPDVKITTVPIDGVRFIVDIVAAKNDSKKISASLVVAEIFPMEEFRPRMKEGEDADALLTRIEYYTLLRLHEIVRARSYETLCLSIVADLGDKVLSKEYTERND
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