NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000039

Scaffold Ga0307477_10000039


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000039 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)219639
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (55.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000623Metagenome / Metatranscriptome979Y
F001107Metagenome / Metatranscriptome776Y
F003428Metagenome / Metatranscriptome487Y
F031628Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000039108F001107N/AMGKVQGWAGFSGHGLHTQAIIVLPAVLPAMFLLRSTREEIYNILWALVFGFATLNILSLGARRFEQGKTGLNFGEILAVLVVLVSIVLLGWELLYVFNILPIRLTPR
Ga0307477_10000039117F003428N/AMPESECAAYKELKDRENRAHAAWTSFLYRNEVKPKLSAKAKRKHQKEEMEAYQQAHKTRLAHVKTCPICMSDLKPAN
Ga0307477_1000003938F031628AGGAGMVKQRITLLLAAVLVLLSFMLALAQTSARWEGIVARSNKQKSTLTVRARSSTSFDEKVIHYDSSTRFTSQEHGDKKINDIDANQVKDGDRVICLGFYNEKGEFQAAAISKRLSQ
Ga0307477_1000003965F000623N/AMDILPLCDQHYRTMEPVLAPYNADYSIEFFRCTDKFCHRCFGERIGYTTPKRGDAPVLTPNQPTCDRHGRPMFIISLDRQRNHVTYACPEPDCNERVVRT
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