NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10080210

Scaffold Ga0307469_10080210


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10080210 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2207
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009570Metagenome / Metatranscriptome316Y
F013324Metagenome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_100802102F009570GGAGGMGDSREFEFEGAATPSEAADALNRIADGIRARSLSLSMGEEEITVYPDGDLAMEIEASEKKGKAKIEIAIAWKRAKDRAEADDEDDD
Ga0307469_100802103F013324AGGMAKNSVQFARIASPEEIAEYLTSLAVGLKRGEISLESGERSLHLSPTSDVKLELKVGQKARKGRIELEIGWKRSTAVKTSELRVAVGQQRPARA

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