NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310813_10901042

Scaffold Ga0310813_10901042


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10901042 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)802
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006715Metagenome366Y
F026116Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0310813_109010421F006715AGGAGMHRYRLFLLLFIVIFATGASLSAHAQEVEDTIKIKTRVVFLDALVKDKRTNLPISNLTTENFQVLDDGKTRDISYFTREGQARKPLALVLILDLRADGAGRFLKEPEILKSMEDELAKLPPGDEVAIMAMNFIEDEERVWLTEFTNDRAKLAAALSRVPAMCGPHDVAPPNPSSTPEKTP
Ga0310813_109010422F026116N/ALNAALSLTWMPLIQTLSAKDEEQVYIFLKEAGDKFHVLVVTIEQRDATVVQVTLSQKNLALLLKDPEGTGKAITQEATINDQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.