NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310813_10149812

Scaffold Ga0310813_10149812


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10149812 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1875
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006399Metagenome / Metatranscriptome374Y

Sequences

Protein IDFamilyRBSSequence
Ga0310813_101498121F006399N/AGYKWKTSGKPVALLRAGTQMATLALNSEVQTLVAEYSIFWQLWPQFEQIHGERRLVGFEVELIGFHTSDLNHLDPGCPACRQVRSVLLAIADAMPRETGSRRNNLTYNIDSHSNSILCLPALGNHSAVSVSIYVFWNWSNGRSPETDVVSEIKGFLNGWGIHQR
Ga0310813_101498122F001596AGGAGMSWFHSSIAGFDARNHASSVEIVACFQGQRNVLGRLAFLITGDQATANQAVVQACETTLQGNGPFRDWLLEWAKAATIGSAISHAAEAIRICEADYKDQRCPHAEHLSPGDDEERAANLALILGSDAQTLISELDPLCRAVLVLRVAIRSSIQDCALRLNMPRAAVLAANCHVLMWLHERYVKPVDENRDALHAL
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