| Basic Information | |
|---|---|
| Taxon OID | 3300031716 Open in IMG/M |
| Scaffold ID | Ga0310813_10039021 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3420 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 36.0 | Long. (o) | -78.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025129 | Metagenome / Metatranscriptome | 203 | Y |
| F031632 | Metagenome / Metatranscriptome | 182 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310813_100390212 | F025129 | GGAGG | MELVFTTVAVIGGVTFSLAVAILVEELIFGKVLCVFFAPRARQPKPAIQR |
| Ga0310813_100390213 | F031632 | AGG | MNHFRTHLCAICGEERSANQTRFLVAENTWEDKLTILQWNEQIASRAGIQAACGIDHVEELVIHWMTTGSLDYPFARTALGATGWRRPTPSGRVDLSGARPLGELAVHRESVERVLAENPQSLKVVLDALLEALRQEIRIEAEPVLRREAEAEEELCGVSTEPEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |