NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000543

Scaffold Ga0307476_10000543


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000543 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28177
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004246Metagenome / Metatranscriptome447Y
F006203Metagenome / Metatranscriptome379Y
F015646Metagenome / Metatranscriptome253Y
F025539Metagenome / Metatranscriptome201Y
F026942Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000054323F025539AGGAGGVSSSVHTALSENDWHLDLVHDLRSQSLPGDPSIDDPVNDTGLGLRCGDLQVRVSLLVS
Ga0307476_1000054326F006203GGAGMLESIVELLGGLLLSALPLLIGSCIVGSIIAALRAVSGGS
Ga0307476_1000054327F015646AGGAGMKTSFVLSLTCLLGLGGSALARDNAHSVEISNAVQIGGTELKPGDYKVEWQGTGPAVQVSFQKNGKTVVTVPGTLKTDDDLVKQDAIVTEATGAGTSTLKEIDFRHLKQALVFDQDLGSM
Ga0307476_1000054331F004246AGGMLDDSDERDDVVAAASICPVPDCGALVVSYRPPERTGRDNARSSCEFTCPHCLIDFSVPEDELIFQSVPKEWLLARVQAA
Ga0307476_100005436F026942GAGMTGNTEGKARKSPIRTGEVELLESLAQRRACGDQDREIACSDARALVRGVRNVLLTVLPLWLALAWWLAR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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