| Basic Information | |
|---|---|
| Taxon OID | 3300031708 Open in IMG/M |
| Scaffold ID | Ga0310686_110740040 Open in IMG/M |
| Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 63320 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (78.46%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000192 | Metagenome / Metatranscriptome | 1666 | Y |
| F000949 | Metagenome / Metatranscriptome | 823 | Y |
| F003215 | Metagenome / Metatranscriptome | 500 | Y |
| F005153 | Metagenome / Metatranscriptome | 410 | Y |
| F008094 | Metagenome / Metatranscriptome | 339 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310686_11074004017 | F003215 | GAG | MRGTIKTLRAVQWTMLGSILLYVVAGEVLGSRPRGVDASLSYVFTTAGVAIVGVIFVVRRTLVLRSAEVLASRPDDSLTLNHWRSGYIATYALCEALGLFGLILRFMGCSLQQSLPFYIGGFVLLFFFGPHEPVAAEAPLPR |
| Ga0310686_1107400402 | F005153 | GGA | MQVFHIRYRNAQGALMRILNAISRRGLDLTSVHADAAGQDHAVTVLLDVTHKQSGQLCREWYSIVDVVDVRSSAASLEHAHPAWTPLPPGSASVSEQSARAALA |
| Ga0310686_11074004020 | F000949 | GGA | MTTKSDSPRSHGDTSYYVLAALAGMGTGVVDVIVNDLLFTALLVLAACMLLGLLRPRCPWRWVVAVVVFIPLTEFAAYAILAVKPTRGQVYGSFLTALPGMAGAYGGAVMRRVIDNLRQG |
| Ga0310686_11074004032 | F008094 | AGGAGG | MRATAWFFGWFAPFLFYVPALLAQTNPPPPDPHEVVTRDPRTLTKPTDRSAALDLLDRARHNYNLRDISFPYALKVSFETNGTTQMEGAWTMEEISDGGSQWRWTAQLQDLQILRIGTNGRVYGNHPSEPVPLRVQLVRSALHWPITRNAGASAIRAADVELNGIPMSCFLLSASIPPNPAPRSWVEREYCIDPVTGFLQMWSEAPGIYAIYDYGGGRAFHGHTLPRQVSIFEDGRLAVQARVESLEDVASLDPALFKFTPELADADESFSLASPNRFPMRVDPSDGPTSPFFQPVIVHAILDAQDGRVLDAEPLQTSDRDLSRAAMDMVNSTTFPPSGFQQEVFINVQFHLPAAKMDGPPIFHSSVRWIILDRRGRVPPIKRPPHPG |
| Ga0310686_11074004052 | F000192 | AGGAG | MAANQVILYFDNQEDAVLFTVAASSVMSAEEPIHSNNAAAKVVQEICKASRITTVGVLNL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |