NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_109391017

Scaffold Ga0310686_109391017


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_109391017 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1603
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000828Metagenome / Metatranscriptome872Y
F064919Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1093910171F000828N/AMGKPSIFDEQYRVVAIEGDRLLIRGILSGDVLAIVNPEPETPLTHHDYPPGKLIALTDPSAAPPNDLN
Ga0310686_1093910172F000042AGGMKNIKFVVKVNRGGAHVPQYVLRVDRLPIQTTTNRKLALVMGRFTAEDAVKSMQNSHCNPELVSVRVTA
Ga0310686_1093910173F064919GGAMHKRECSACGGELVLAVRGSQASTNHAPTLMTNAVTSWRCGTCGSAFSAAQLREDKRGRAKAATRA
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