NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_104854645

Scaffold Ga0310686_104854645


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_104854645 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5530
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005887Metagenome / Metatranscriptome387Y
F008092Metagenome / Metatranscriptome339Y
F018412Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1048546455F008092AGGAGMTTIPSTTIITNLKGVTLPTANTLADATEGGFDMAGMLALALTKADELRVCLTLIVRFTDPADPNLTALDDILASLT
Ga0310686_1048546456F005887GGAMGVMDRELMLKAIDTEFQREVLDKLVRLETKMDGLMGNGQPGRMKTAEDKVAVLERNDLRNSVHNRIVNGAISAAVSVAIALHKYWLK
Ga0310686_1048546458F018412AGGAGMSDAIDPEAATPSVPQAFEQSDRNPVVTEFGGTDAGGGPLPAPDSTESRVTQPGPAPSADAGLVNYDTGDSVDQVQDEAEREG
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