| Basic Information | |
|---|---|
| Taxon OID | 3300031708 Open in IMG/M |
| Scaffold ID | Ga0310686_102723642 Open in IMG/M |
| Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 166177 |
| Total Scaffold Genes | 132 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 106 (80.30%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000279 | Metagenome / Metatranscriptome | 1383 | Y |
| F002101 | Metagenome / Metatranscriptome | 593 | Y |
| F022474 | Metagenome / Metatranscriptome | 214 | Y |
| F029822 | Metagenome / Metatranscriptome | 187 | Y |
| F057598 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310686_102723642106 | F000279 | AGG | MSLQASSGVQSARLDAVIKLSFDESSMTHKPEHAAVEEEEIILPENLLPLGSVLGEGITPQDISMVLAKVFHVQYAEVALLRLEGGLLKFVFPEHLRTTGAIPISSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPVGAEEDSPAPPAPIQKLMSVPILDNSSTVLGVLQISRKGLDPRFTQDFSREDLHDLELAAGLLAGSPVMLAN |
| Ga0310686_10272364224 | F002101 | AGAAGG | MTTPPIGLPVSAVEANPAKKKRVLLLDTSQSKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINGIGEVEERDKFCVDIRRATPPQRIAFFVGGPEYLALAPHSDGGPSAEVGGGLPGGLVAALLAQSSQPASQRWGILEACKRISSVRAVSEARSRAIRETPRPSRWAEAIEQHSTPEEIRSQSTFSGTITAEREGLV |
| Ga0310686_10272364241 | F057598 | GGA | MKMRLTKSQRGFSLLELTIAASLGVLVILAMTSLFRTGMNTTLTVTQRAETQQNMRAAIELLTKDISLAGSGLPAGGLQLATAGGATKVACNQGGTCYVPGDLYNANYMTGILPGFGNGVESSAIIAAAPAATNDSITSIYCDYNFPLSNFTFAFPTTTSATATVISGAVIPNNVLAPGGLNVGDLMLFTVSSAGNGTTSQGTSAVQTAAAVGEITGLSPGTPPTITFASADALNFNQAVGDANSLAYVIQNSMGGGTTVTACRLEAVTYFLQVPPAGGTVQTPRLMRQVNGLTAVPVADNIINLQFSYDVISSTSGLMNANLANVIAAGDSPALIQKVNMWIMGQSLTSGGNRNQSMYLASSVSTRNMSFCNSYSSSTTVCQ |
| Ga0310686_10272364292 | F029822 | AGGAGG | VKTTLSAVALLLALSLTAVAANSKKPAVSQHRAGNPSIPLQEPKYNPNSVPPSLCSPCLFYGGDLNTGDINAAGMSDENTLLILGGSSTYAAVNIPTGVTATVYGILFNVQADAAFDPLAASYDIRTGVSEGNGGTSIASGSGTAVVQPTGRNFIGLNEYTVAVSWSTPVTLVSGEYWFNVTPQCLNTLDGSCSAFRQFVSNTTQGANDIHGNWQPVHQMYLNSSFFGFTWADWCDASLEFNANQCGYMSFGLRGTE |
| Ga0310686_10272364293 | F022474 | AGGAGG | VKTTLLAAALVLALTLSAAAAKKPAPSQHLAGSDVASKLAGPGVPPTLCDPCLFYGGDLNVSSLNAAGLSDENTLLILGGSSTYASFTLTGVSANITGIVFNIQADTNFDPQTATYDVRTGVTDGNGGTSIASGTSSIGVAATGRNFIGLNEYTVAVQLSTPLLIGPGEYWFNLTPACTNGSQDGSCSVGRIFLSNTTSRTNNVNGGAQVQGQLFLNSSFFGFTYTNWCDSSLGLNTNQCAGASFGLMGSLVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |