NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102513875

Scaffold Ga0310686_102513875


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102513875 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000626Metagenome / Metatranscriptome976Y
F037354Metagenome / Metatranscriptome168Y
F099804Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1025138751F037354GAGGMHRALESRAFIAAILAMTGGAFLVHAHPFPDQQIFLRVIAERAPQAFLSFKYI
Ga0310686_1025138752F000626AGGAGGMPIIKKAPEITTREIRLEEPVNELLEDYARFIESNADHVINAVLKKVLWRDHDYRKWRETHRDAQIGADKAQTTEARGKA
Ga0310686_1025138753F099804N/AMRVCSELSVTAEKTPGTIQRAAGRERPHELFGRLKAEKVGSL
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