NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_101254358

Scaffold Ga0310686_101254358


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_101254358 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5667
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1012543584F005268N/AMINDDEPDEPQVWRVLSDAGLVEIRLDEFAERIRDVKRMVTGRLFDLLNFNTGVQERESAAYSLGTLKGLELKVLANAPKPPDPSER
Ga0310686_1012543585F003832GAGMQSAAKQLSTAENWPPQEGQIISLRTSTGSTASETAILKEVRWGLVWRDFVLEDGRVIPEHRILGCPQPQAWRKISEVTDQEREECEERLLSMAGAGMDPRERDQSFWAELNQYLAYTYLRFKPPGSRIREQDQGQEKGQEKERKGPMTTDREP
Ga0310686_1012543587F014888AGGAGMNKVMEVLLTVVALAGLYSAISTSASAPSSSAIRAEQAVVVADGSDPMPLCRPGRCPKQV
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