NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_100808223

Scaffold Ga0310686_100808223


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_100808223 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)78131
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (73.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000954Metagenome / Metatranscriptome822Y
F001867Metagenome / Metatranscriptome624Y
F002346Metagenome / Metatranscriptome568Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10080822335F000954N/AMVPSLSPMKKGVLVAIAVVLAPVLLVGVVVFAAGDWRQIGATPGGDQVLVSSVAAQKNGLRTAWIRVEYKDPAKLPQGGPFVELRARVHFNCANGSAVPNSVWFYSRDHSGKLVVSKKTRRDDQFGQASEGGFGDIARDYVCK
Ga0310686_10080822361F002346GAGGVRALDRICAGSLFLLAIVVCMLVPRTYTGRIWILGTGLALLFTAMLNLLRIRNGPGVWGLSLFSSAANVTMLVFGIALMVSIGKLRTLEHPQILLAGALLLAETVFSLVSGHDDPSSKRKLFNEVPR
Ga0310686_10080822364F001867GAGGVTDHSSDHSWFQKYLEFHCDDCGCDVGFRSRRRSFSERYVLPIFLLQPVRCSECFRRDYRLIFMPVRERLSEVTGKRPVPVVPDRDTRNVA
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