NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10404260

Scaffold Ga0315291_10404260


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10404260 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004599Metagenome / Metatranscriptome431N
F020681Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_104042602F020681AGGAMTKFRCNFCSANSDFIWLDGYTTSDGFKVFQCLKCCAVGTKNLAEATDTQEPVIRCDQCGAWKFLDITCHTCNLIGAK
Ga0315291_104042604F004599GGAMAFNLSDYEDVATLNKWFISNFASGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNIAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVNDEPIKNIYGKSGNSQVIELALRKSFADDAKPTSEPTTWSVGDVAEALSSKPKQQECTHGLMILKEGTAKTGKPFHGYVCSAPRGEQCAAKWAVTAANGSWFFREEE
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