NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10238954

Scaffold Ga0315291_10238954


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10238954 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1823
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023785Metagenome208Y
F033800Metagenome176N
F050155Metagenome145Y
F096647Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_102389542F023785N/AMKYIITEGQYANLPENEKALFWIKRRYGSVLEALKETFDLMKFDICRIDSYDRFENKFFSVLMDSLHPEIYDDENFDHWTYDTMFNILQDLYYVECTEFYFKGRERC
Ga0315291_102389543F050155N/AMKRALMTKVIFKFLDTKYPNAYVKKTIFGNLTMYGDDYVSTHGLTVELCKWFDVTQEFARHNIERWGSALPVVVNLRNSTNPDVWVADAVVFNTTTL
Ga0315291_102389544F033800N/AMDNTYIALKKILNMMVPKKYPIVSGIKVIDDSYSYDNQTNYLIYLGVSYDELDGLNSSDIRDYVRGVASYVLKGDETMRIVFYNPDL
Ga0315291_102389545F096647N/ASGVVIYHQIFNLSDKLMEKFITDKGNGIIEFVRFHSGKDVRTRVNSFLREDIKKYFDIHDIDIEMYVLEWCRNKSTGVVEM
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