NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10154325

Scaffold Ga0315291_10154325


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10154325 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2397
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006693Metagenome / Metatranscriptome366Y
F025460Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101543251F006693N/AAASNFVAGGPSIANLAGARTAQQQGAMQQYIQANQALPGGFNQQPSTAANFYQAVDQQIPVQLTNAFNQLYRSQADYGASTYGAQIGAISRQPSGAEQFGQVATGLGNLIKI
Ga0315291_101543252F025460AGGAGMAVIDVPELMNMFRQGDIDKQAAAEAQRKREIEDREMALKEQPDVDFTFEKGGLKVKGKLKDLPALSQDPNFAPYLAGIGSTITNEQSLENEDINAQREAINERLTKLSKEKLKQELELAKGDTRTGAMELGLGLVGMKPRSDVMKELEAERGVLRGRMAELGFNRQSGQMETNVPDYQSEAMPLQATPQVTPQVAPETPAQTPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ
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