NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10144633

Scaffold Ga0315291_10144633


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10144633 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2495
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0315291_101446332F012670AGGAMLDEIRPEGTHASSEKTKAYAREYYAKKKAQKRATDIVTGKAEPKTSTHGAGGRPKSVVNRVTEYGALFNKLNEEHMAKGFAPLKTAMEVLIEAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVQNITKDEEISADDALDDFLQSLKKV
Ga0315291_101446337F001059AGGAMALYDIDSLKADLPTAKDLAQFVYDKIGISLDLIGKPKADQYLAAKNALEGKKIPAEYISDVNPYVDRKELIPQDELRILPDRSKDLPAVENRTHFFGATNMPHPIDPQSDRKVQIDFYKYDNGAITYTITGPVEQIAVGERINKFGVKQPEKYSWMDPRTEETLLRRADGTFTEKGRGVYAYCIGEKGGGIWPMIDRNFLASIEKNVTNPWS
Ga0315291_101446338F006264N/AMEDYATVFRQKLSGQAEVCARKALETLQKDLQGPRSFSAEEIYYLASAAQVLLTMRDY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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