NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315291_10071617

Scaffold Ga0315291_10071617


Overview

Basic Information
Taxon OID3300031707 Open in IMG/M
Scaffold IDGa0315291_10071617 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3817
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5895Long. (o)-110.359Alt. (m)Depth (m)92
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017989Metagenome237Y
F025268Metagenome / Metatranscriptome202N
F027487Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0315291_100716173F025268N/AMSEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCSPFRSITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWLGITTDDGTYCGLVDDQSWFVPEHALNNEAGYDLCALRVKIAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWARLIRVPRYIKTVLENGCAYIPNKAYRNADFGISVAMVNKAMCKWTMPSSSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPKSKNLYGSCCPLNEYIVPQDLADCYSCAGVGDIVVPS
Ga0315291_100716175F027487N/AMACFTALDYRNKSYPFVQTIAAAAGIDPISYGCYDASSDAAKLYQFYVGLATIGELTPVTQNCFVQKTEDQQYYLTNEALAAALTPGG
Ga0315291_100716176F017989N/AMALTQPCFTNLTPDQQNFNIYESLKEIAGFEIPAYDQIDISYYGVTNNIATVQYLKDGVPVATLTLSYAVQPPTTNDANLTTITVAYP
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Institute for Fundamental Biomedical Research
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