NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308003_1089746

Scaffold Ga0308003_1089746


Overview

Basic Information
Taxon OID3300031705 Open in IMG/M
Scaffold IDGa0308003_1089746 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)999
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Diapherotrites → unclassified Diapherotrites → Candidatus Diapherotrites archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000502Metagenome / Metatranscriptome1073Y
F080517Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0308003_10897462F080517N/AMTIVHSKNSSIGYDTVNKCVATVNTPENTSYETMIKICIDKLINGVEVDKYKSALINMAKMMDKEGI
Ga0308003_10897463F000502AGGAMTIETIARLMMILVGFIILMLGAITFLHSGEHQTLGILISFAGVMSMFGGLPQXLKI

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