| Basic Information | |
|---|---|
| Taxon OID | 3300031696 Open in IMG/M |
| Scaffold ID | Ga0307995_1018152 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3233 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 18 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053569 | Metagenome / Metatranscriptome | 141 | N |
| F071661 | Metagenome | 122 | N |
| F086166 | Metagenome / Metatranscriptome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307995_10181523 | F053569 | GGA | MTDIYLEALSDFYKLFEYNNPYCKNLNAEKHLAYKEAALKIVDEIKRGYA |
| Ga0307995_10181526 | F086166 | GAGG | MDYMIKKVDGVGYLPIVIDEYSNEIYRGEYHQKAHDAIDAALSYVDEHYCSDCNMSVDHKDFTWNHPESLTDEQMGLANEY |
| Ga0307995_10181527 | F071661 | GGA | MNTKVQVQVPVPITMLSDEDILAEINRRHILIKWARKPIPEPDNRGRSFVSPSCVVEEWDCRK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |