| Basic Information | |
|---|---|
| Taxon OID | 3300031693 Open in IMG/M |
| Scaffold ID | Ga0302139_10179012 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CBN3_33.1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 923 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 80.9595 | Long. (o) | -132.1842 | Alt. (m) | Depth (m) | 139 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002182 | Metagenome / Metatranscriptome | 586 | Y |
| F005795 | Metagenome | 390 | Y |
| F034718 | Metagenome | 174 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302139_101790121 | F034718 | N/A | DSRDTGYTQWDIHMITAFVIIAYVCLFLFGVGTVLAFFSSWRAGCLGRDLAEVKSGLTWVFLTIKNFAQRIFNRRVYSHARGHWMYYALLVMFMILIIQPNI |
| Ga0302139_101790122 | F005795 | N/A | MLLRVLLTLAVMTTCAMAFHDNTYAVFELREQLLRLTLNLWELLAQLEYASEPLRQRVYLDIGLVQAEINHTIAELMRLDTLQHPRSE |
| Ga0302139_101790123 | F002182 | AGGA | MIYTAEEHDWLSTRKNKKRVSNQTQDGSAPKGRDYRKHDWAITTTIEVDGRHYV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |