NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308011_10039710

Scaffold Ga0308011_10039710


Overview

Basic Information
Taxon OID3300031688 Open in IMG/M
Scaffold IDGa0308011_10039710 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #177
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1528
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049949Metagenome / Metatranscriptome146N
F090893Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0308011_100397101F090893AGAAGGMPIERKDRSFDLIFDQVSMDHVPAEYIQEVRVDLGNGERITLTKEDLLLIKNKSADEIIKALTVDSMSNISLKLDYDAIKSDVLKGVTSFL
Ga0308011_100397104F049949N/ARKEMKNKIKLVMNGGSLSETDLQLIAGGDLVLQMMRNRVVVVTNNNDLAWTDLMTDVSGLYHIRPLDKSKQIYQLWFELESDIDQFNKNLYVMKLSDTAHEPA

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