NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308008_1016321

Scaffold Ga0308008_1016321


Overview

Basic Information
Taxon OID3300031687 Open in IMG/M
Scaffold IDGa0308008_1016321 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #125
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1901
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016596Metagenome / Metatranscriptome246Y
F052205Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0308008_10163213F052205GAGMTDWIDDALDGKPSEITNSQWLTIEGNIDFTSLSTTMKSDILNRLNDLSEIEAEEIITILYNNRYEKDPQKQWLKMFRDGVFKHRDF
Ga0308008_10163215F016596N/AMTKKYSLAKIRKSRNEFEALLRIYGISNSTFCKVIGVNYATSRGFIIEPTNLRFIHAHRLADFIG

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