NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10193670

Scaffold Ga0307377_10193670


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10193670 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1586
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047751Metagenome149Y
F072485Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0307377_101936702F047751AGGAGMAEELAPELKESIDEYYLEMSPEIKDLLHGWLYRIVEAAYEGIGELPSEHRDRMLMKMSKACSDQAKMVLDCKPGMSWEAYKKHMANLQPPFGPRKITQIGDIVHWTYVPPKDKKGKPICQCPLAMFGWMKGRPELCACSANSVRSYIEEYTNKKVDSVETLSSPQVDGSDECCFLVHLKPSPFTTAKPEAKAIKKAKGGRSRKTKRTKSR
Ga0307377_101936703F072485N/AGMFMMGIHYNENLALWELDNWATLDRIQELHDKHPLMKAWQRESVDYITDFTGKILEPAPFSPTLAKLKKGDYKYTIYLHTLARVFPGKEDEYMEAVGKELKPMAKRWGMKLVGCYKAVAGTASSGEVINIWTAGNIHGDWVKIRAKSLKDPAYKEWEARAGKWRPKVVYRFLYGLVPYSPLRTPFLQEPASPEEVRTVAMPEVEWK
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