NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307377_10032311

Scaffold Ga0307377_10032311


Overview

Basic Information
Taxon OID3300031673 Open in IMG/M
Scaffold IDGa0307377_10032311 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4639
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010828Metagenome298N
F031053Metagenome183Y
F047658Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0307377_100323115F031053AGAAGGMRQNEKHENYGLYITQNTYQMKWYCFDRKAADDYWNGKPCKKAVGDTQQEALSNYKNGKYCNK
Ga0307377_100323116F047658N/AVEVRTITDYLKQDPEWAKILSMDKNEVLLFIAERLDQITMMEQGRYSGKITREEQKLYQDAWSYMDPKAKVCFTCGRTPQLMSAALLNFYQCQQDNMESGGGETETASTTPKRKRRRRTS
Ga0307377_100323117F010828N/AVKDQAAIDLLSDQELHELAQKLCNCPDDLIQEVVLLLLEMPDEKWQQINEGGYLRFYIVRTMMTMATSKRSSFSKLYDLHNHKRVDHEREDYDWDKENDITLLEILIEELHWYDKEVLKLWLDEGSYRKVGKKVDIPYKSIGNTVNKALEQLRDNYYAIHLERIIRERCRLPLD
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