| Basic Information | |
|---|---|
| Taxon OID | 3300031671 Open in IMG/M |
| Scaffold ID | Ga0307372_10272787 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - OX-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 984 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003389 | Metagenome | 489 | Y |
| F046134 | Metagenome | 151 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307372_102727871 | F046134 | N/A | RLHRDNISAAGPKLPDGTTAQPGMAEAIELQRQAGHALYAGHLSAMLYGTGPNPAQS |
| Ga0307372_102727872 | F003389 | AGGA | MQITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEAEDLDGLDEWIHAEVIEPLNTFRVDQHKLEVSAASVPAPADENQHITRRELASVLHGLRLMQEQWEPKMHGCTSIGLHDPLELSEPNSCDHFCDEEVSPLNPAEIDDLCERLNMGPLLQTN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |