NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307375_10282856

Scaffold Ga0307375_10282856


Overview

Basic Information
Taxon OID3300031669 Open in IMG/M
Scaffold IDGa0307375_10282856 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019142Metagenome / Metatranscriptome231N
F092072Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0307375_102828561F092072N/AMAVKFSQFTTGATLADIDYFVGYQGTDNVQVPKALLTGTTYTVDVPA
Ga0307375_102828565F019142N/ATSHAIARWWGKLTKGFKCNWNKIIFAVSFKMSDCSSGEKICTCKK

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