NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307994_1022627

Scaffold Ga0307994_1022627


Overview

Basic Information
Taxon OID3300031660 Open in IMG/M
Scaffold IDGa0307994_1022627 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #261
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2748
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047554Metagenome149N
F057929Metagenome / Metatranscriptome135Y
F084329Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0307994_10226272F047554AGGGGGLEYVLKKEHVVIEDDVHAILDLKKAGEVEWYTSPEYDLLAWNKEENCVFGLLKQTGGTYNLSFNVANHGEYDLELDKVLKVCNERFEAMLDW
Ga0307994_10226273F057929N/AMLLEFPPPKQPTAIIKLVVKDLVQRFRTSGTETISWFVAEGELVQFDENFDRLERSQMRHRMLHELYQSQTATVLIERFENFPEPHLDGNYCQFGGCSGIGDNVRPTADVRLKSDIYDYVEKAFVMPYPQIEFELRFTQAIQRAEMSVIFDKLPEPESGGLSNNFTLDTDAVGGTGLWYADCKLVEIKTFQAQLNASAYNANIGGNDFGVCFEKGACSHRG
Ga0307994_10226275F084329N/ASVDGAATRMSSEPASNAAFSVSRQAAKRTTIQHEMKSALRKLGLPEDGPATEEITLLAITPWFQALLQKDRLRTLTLDEAEEVGQAVSASLTQLILKRGERR
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