NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307991_1001103

Scaffold Ga0307991_1001103


Overview

Basic Information
Taxon OID3300031657 Open in IMG/M
Scaffold IDGa0307991_1001103 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19233
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307991_100110310F059653AGGAGMTNKEALQSQTEYKNDNLLEKLLLDRGVATGGTYVAANAKDIDLCAADLYFTLATHPEYKEGAFSIKYSGAQLIAMAKRILRKYDMDEPTVSGEAII
Ga0307991_10011037F031354AGGAMKTTFDINDILFPVINVASVQATIDGRIYRNKKPLNSELQDIVIIPLSNYNGDEIVNDATFMVNCYCKNYNNGTPNITKLRAITNAVAAVIEAYNNTSNYYIFDIVNQVLLNDVDQVSMSYVNLRINCFIEK
Ga0307991_10011039F091296GGAGGLIKRYPHTATLSYYTPGTTNTIGIYTEGTLVTIGIVCNAQPNSTKYIIGESGDMIGYNWFISSPIFAGAGDVPDNAKLTFFSKEHIILRLFEYQKHIEMKC
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.