NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308018_10009880

Scaffold Ga0308018_10009880


Overview

Basic Information
Taxon OID3300031655 Open in IMG/M
Scaffold IDGa0308018_10009880 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3756
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004439Metagenome438Y
F076495Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0308018_100098803F004439AGGMITFKGFLAEARGTSLSDLLFLPRIGWYDQLMIPISSSMFKRIWPDTLRASVFHTTDGEGIKNIAKLQGKKKQISAFFSMQARYMKSGVATEGGIHSVLEMDGDVLLSASGDVMSHVDRSGRRWTSISDLKETSRGVKFGGVEKDLEKMFEALVEKYLDKGEFQQSATSFQLWSMAKRKVDSKTMRLIIKDYLDGMEKVIKKNIGIFSEVMLGYAKKRTTNLSWDEQIVNNFKVKTAHFFKLPIPIAQTPEQEAMAEDEKELIDFAKSKGWSIKMWDNAGGLETYTKEVANKELKI
Ga0308018_100098805F076495GAGMKTFKELVKFQKVTVKDKSGKSHSMQTRIRPDITHVAIMHYGAIAGTNFATAVKANTSLNFGTEKSLDKVISHAKKKFNLKTAEIQKLDKKYL
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