NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307985_10105234

Scaffold Ga0307985_10105234


Overview

Basic Information
Taxon OID3300031629 Open in IMG/M
Scaffold IDGa0307985_10105234 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016738Metagenome / Metatranscriptome245Y
F059366Metagenome / Metatranscriptome134N
F076518Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0307985_101052342F059366AGGAMISGLDSVKTKVLENAVFSSILAGSRRVSEKNRQIAINNELKLLQHHRELGHQTPLETERSLETERLLKREHRRWNLTKGYYAISEGFEL
Ga0307985_101052343F016738GAGGLKDYLATPKPVSPYKDLIDDYQGAVTKAAHGESGGLCHIYKSQLNPTARKKYNKRKVA
Ga0307985_101052345F076518N/AMTLDHDQCVDVIKKYNAHIPAWSIAATMGITRNDIRAIRYCKKNHLPLTDYKCALSDPSYKLGPLSERPCAWDLRLSMKLARLPMSKWA
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